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ome/ome-zarr-py: Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

ome/ome-zarr-py: Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

21 hours ago

|pypi| |docs| |coverage|

=========== ome-zarr-py ===========

Tools for multi-resolution images stored in Zarr filesets, according to the OME NGFF spec_.

See Documentation _ for usage information.

Documentation -------------

Documentation will be automatically built with readthedocs.

It can be built locally with::

$ uv run --group docs sphinx-build -b html docs/source/ docs/build/

Or, if you prefer using pip:

$ pip install .[docs] $ sphinx-build -b html docs/source/ docs/build/

Tests -----

Tests can be run locally via uv with::

$ uv run --group tests pytest

To enable pre-commit code validation::

$ pip install pre-commit $ pre-commit install

Release process ---------------

This repository uses setuptools_scm to manage version numbers.

Go to https://github.com/ome/ome-zarr-py/releases and click on Draft a new release.

Under Choose a tag, type the new version number (e.g. 0.1.0) and choose Create a new tag on publish from the dropdown.

Click on Generate release notes to create a changelog and Publish release to publish the release.

License -------

Distributed under the terms of the BSD_ license, "ome-zarr-py" is free and open source software

.. _OME NGFF spec: https://github.com/ome/ngff .. _BSD: https://opensource.org/licenses/BSD-2-Clause

.. |pypi| image:: https://badge.fury.io/py/ome-zarr.svg :alt: PyPI project :target: https://badge.fury.io/py/ome-zarr

.. |docs| image:: https://readthedocs.org/projects/ome-zarr/badge/?version=stable :alt: Documentation Status :target: https://ome-zarr.readthedocs.io/en/stable/?badge=stable

.. |coverage| image:: https://codecov.io/gh/ome/ome-zarr-py/branch/master/graph/badge.svg :alt: Test coverage :target: https://codecov.io/gh/ome/ome-zarr-py

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